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OSAR: 视觉化学结构识别
来源:互联网   发布日期:2011-09-09 15:20:34   浏览:22629次  

导读:可以将文献中的化学结构的图片直接转化成为smi格式的分子结构文件, 配合文件格式转化和3D结构生成工具,可以直接将文献库转化成为化合物结构数据库,很有创意的...

前两天在ccl.net上不正说这个事儿呢吗?

On 7/19/07, Igor Filippov Contr igorf@helix.nih.gov
OSRA can read a document in any of the over 90 graphical formats parseable by ImageMagick (GIF, JPEG, PNG, TIFF, PDF, PS etc.) and generate the SMILES representation of the molecular structure images encountered within that document.

On the webpage you mention it can process images from PubChem... so I assume you actually did this; what is the fail rate on PubChem?
Are there a particular class of drawings it cannot handle well?
How well does it work on stereochemistry?
Does it also recognize the labels below drawing, things like compound '1'? (Yes, I tried the 'patent' demo, but that's just the demo...)

Great to see this addition to the growing list of open source chemoinformatics tools!
Sent to CCL by: "Egon Willighagen"
egon.willighagen@gmail.com

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